Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 4 threads; /home/mirmir/work/progs/juicer-master/CPU/juicer.sh: line 338: java: command not found; /home/mirmir/work/progs/juicer-master/CPU/juicer.sh -t 4 -d /home/mirmir/work/fastq/Darevska/DN1 -p /sf/storage/gmo/mirmir/data/Darevska/daNa.chr.sizes -q 30 -s none -n daNa -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /sf/storage/gmo/mirmir/data/Darevska/daNa.fa -o /sf/storage/gmo/mirmir/out/Darevska/DN1 -D /home/mirmir/work/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  38,918
 Normal Paired: 17,588 (45.19%)
 Chimeric Paired: 15,102 (38.80%)
 Chimeric Ambiguous: 5,899 (15.16%)
 Unmapped: 329 (0.85%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 32,690 (84.00%)
Unique Reads: 32,027 (82.29%)
PCR Duplicates: 1 (0.00%)
Optical Duplicates: 662 (1.70%)
Library Complexity Estimate: 512,885,728
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,947 (12.71% / 15.45%)
Hi-C Contacts: 27,080 (69.58% / 84.55%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 61% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 20% - 29% - 21% - 30%
 DE: 41%
 Cis/all (FF and RR orient): 75.9%
Inter-chromosomal: 3,889  (9.99% / 12.14%)
Intra-chromosomal: 23,191  (59.59% / 72.41%)
Short Range (<20,000bp): 15,586  (40.05% / 48.67%)
Long Range (>20,000bp): 7,605  (19.54% / 23.75%)