Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 4 threads; /home/mirmir/work/progs/juicer-master/CPU/juicer.sh: line 338: java: command not found; /home/mirmir/work/progs/juicer-master/CPU/juicer.sh -t 4 -d /home/mirmir/work/fastq/Darevska/DN1 -p /sf/storage/gmo/mirmir/data/Darevska/daNa.chr.sizes -q 30 -s none -n daNa -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /sf/storage/gmo/mirmir/data/Darevska/daNa.fa -o /sf/storage/gmo/mirmir/out/Darevska/DN1 -D /home/mirmir/work/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  38,918
 Normal Paired: 17,588 (45.19%)
 Chimeric Paired: 15,102 (38.80%)
 Chimeric Ambiguous: 5,899 (15.16%)
 Unmapped: 329 (0.85%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 32,690 (84.00%)
Unique Reads: 32,027 (82.29%)
PCR Duplicates: 1 (0.00%)
Optical Duplicates: 662 (1.70%)
Library Complexity Estimate: 512,885,728
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,578 (24.61% / 29.91%)
Hi-C Contacts: 22,449 (57.68% / 70.09%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 62% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 17% - 30% - 21% - 31%
 DE: 43%
 Cis/all (FF and RR orient): 80.1%
Inter-chromosomal: 2,594  (6.67% / 8.10%)
Intra-chromosomal: 19,855  (51.02% / 61.99%)
Short Range (<20,000bp): 13,652  (35.08% / 42.63%)
Long Range (>20,000bp): 6,203  (15.94% / 19.37%)