Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -S final -d /mnt/storage/home/manuriddinov/scratch/fastq/Darevskia/DA1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daAr.scf.sizes -q 30 -s none -n daAr -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daAr.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Darevskia/daAr -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  31,999,041
 Normal Paired: 15,845,713 (49.52%)
 Chimeric Paired: 9,947,899 (31.09%)
 Chimeric Ambiguous: 5,497,844 (17.18%)
 Unmapped: 707,585 (2.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 25,793,612 (80.61%)
Unique Reads: 21,263,210 (66.45%)
PCR Duplicates: 4,125,282 (12.89%)
Optical Duplicates: 405,120 (1.27%)
Library Complexity Estimate: 69,410,704
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 13,923,347 (43.51% / 65.48%)
Hi-C Contacts: 7,339,863 (22.94% / 34.52%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 41%
 Cis/all (FF and RR orient): 64.0%
Inter-chromosomal: 1,548,466  (4.84% / 7.28%)
Intra-chromosomal: 5,791,397  (18.10% / 27.24%)
Short Range (<20,000bp): 4,196,205  (13.11% / 19.73%)
Long Range (>20,000bp): 1,595,192  (4.99% / 7.50%)