Experiment description: Juicer version 1.5.6;20 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 20 -d /mnt/storage/home/manuriddinov/scratch/fastq/Darevskia/DN1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daNa.scf.sizes -q 30 -s none -n daNa -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daNa.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Darevskia/daNa -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  41,232,515
 Normal Paired: 19,431,531 (47.13%)
 Chimeric Paired: 14,036,555 (34.04%)
 Chimeric Ambiguous: 6,542,672 (15.87%)
 Unmapped: 1,221,757 (2.96%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 33,468,086 (81.17%)
Unique Reads: 26,664,675 (64.67%)
PCR Duplicates: 6,265,692 (15.20%)
Optical Duplicates: 537,719 (1.30%)
Library Complexity Estimate: 75,170,032
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,040,464 (12.22% / 18.90%)
Hi-C Contacts: 21,624,211 (52.44% / 81.10%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 58% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 20% - 28% - 22% - 30%
 DE: 38%
 Cis/all (FF and RR orient): 75.7%
Inter-chromosomal: 3,276,737  (7.95% / 12.29%)
Intra-chromosomal: 18,347,474  (44.50% / 68.81%)
Short Range (<20,000bp): 11,901,292  (28.86% / 44.63%)
Long Range (>20,000bp): 6,446,182  (15.63% / 24.17%)