Experiment description: Juicer version 1.5.6;20 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 20 -d /mnt/storage/home/manuriddinov/scratch/fastq/Darevskia/DN1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daNa.scf.sizes -q 30 -s none -n daNa -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daNa.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Darevskia/daNa -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  41,232,515
 Normal Paired: 19,431,531 (47.13%)
 Chimeric Paired: 14,036,555 (34.04%)
 Chimeric Ambiguous: 6,542,672 (15.87%)
 Unmapped: 1,221,757 (2.96%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 33,468,086 (81.17%)
Unique Reads: 26,664,675 (64.67%)
PCR Duplicates: 6,265,692 (15.20%)
Optical Duplicates: 537,719 (1.30%)
Library Complexity Estimate: 75,170,032
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,057,033 (21.97% / 33.97%)
Hi-C Contacts: 17,607,642 (42.70% / 66.03%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 19% - 29% - 21% - 31%
 DE: 40%
 Cis/all (FF and RR orient): 80.0%
Inter-chromosomal: 2,114,964  (5.13% / 7.93%)
Intra-chromosomal: 15,492,678  (37.57% / 58.10%)
Short Range (<20,000bp): 10,247,855  (24.85% / 38.43%)
Long Range (>20,000bp): 5,244,823  (12.72% / 19.67%)