Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -S final -d /mnt/storage/home/manuriddinov/scratch/fastq/Darevskia/DU -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daUn.scf.sizes -q 0 -s none -n daUn -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daUn.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Darevskia/daUn -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  76,976
 Normal Paired: 46,494 (60.40%)
 Chimeric Paired: 8,019 (10.42%)
 Chimeric Ambiguous: 3,546 (4.61%)
 Unmapped: 18,917 (24.58%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,513 (70.82%)
Unique Reads: 43,812 (56.92%)
PCR Duplicates: 10,021 (13.02%)
Optical Duplicates: 680 (0.88%)
Library Complexity Estimate: 126,031
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,441 (8.37% / 14.70%)
Hi-C Contacts: 37,371 (48.55% / 85.30%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 27% - 25% - 24% - 23%
 DE: 78%
 Cis/all (FF and RR orient): 47.3%
Inter-chromosomal: 4,393  (5.71% / 10.03%)
Intra-chromosomal: 32,978  (42.84% / 75.27%)
Short Range (<20,000bp): 30,451  (39.56% / 69.50%)
Long Range (>20,000bp): 2,527  (3.28% / 5.77%)