Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/Darevskia/DU -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daUn.scf.sizes -q 30 -s none -n daUn -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daUn.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Darevskia/daUn -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  76,976
 Normal Paired: 46,494 (60.40%)
 Chimeric Paired: 8,019 (10.42%)
 Chimeric Ambiguous: 3,546 (4.61%)
 Unmapped: 18,917 (24.58%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,513 (70.82%)
Unique Reads: 43,812 (56.92%)
PCR Duplicates: 10,021 (13.02%)
Optical Duplicates: 680 (0.88%)
Library Complexity Estimate: 126,031
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,242 (12.01% / 21.09%)
Hi-C Contacts: 34,570 (44.91% / 78.91%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 24% - 24%
 DE: 80%
 Cis/all (FF and RR orient): 52.9%
Inter-chromosomal: 3,246  (4.22% / 7.41%)
Intra-chromosomal: 31,324  (40.69% / 71.50%)
Short Range (<20,000bp): 28,984  (37.65% / 66.16%)
Long Range (>20,000bp): 2,340  (3.04% / 5.34%)