Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -S final -d /mnt/storage/home/manuriddinov/scratch/fastq/Darevskia/DV -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daVa.scf.sizes -q 30 -s none -n daVa -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/scf/Darevskia/daVa.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Darevskia/daVa -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  124,046
 Normal Paired: 97,364 (78.49%)
 Chimeric Paired: 12,729 (10.26%)
 Chimeric Ambiguous: 3,655 (2.95%)
 Unmapped: 10,298 (8.30%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 110,093 (88.75%)
Unique Reads: 88,292 (71.18%)
PCR Duplicates: 20,087 (16.19%)
Optical Duplicates: 1,714 (1.38%)
Library Complexity Estimate: 255,009
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 11,173 (9.01% / 12.65%)
Hi-C Contacts: 77,119 (62.17% / 87.35%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 1% - 96% - 2% - 1%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 24% - 26%
 DE: 83%
 Cis/all (FF and RR orient): 24.4%
Inter-chromosomal: 9,996  (8.06% / 11.32%)
Intra-chromosomal: 67,123  (54.11% / 76.02%)
Short Range (<20,000bp): 65,499  (52.80% / 74.18%)
Long Range (>20,000bp): 1,624  (1.31% / 1.84%)