Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/degron/dMR231-A -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.chr.sizes -q 30 -s none -n dMR231-A -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/degron/dMR231-A -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  101,650,528
 Normal Paired: 38,045,577 (37.43%)
 Chimeric Paired: 49,322,862 (48.52%)
 Chimeric Ambiguous: 13,933,766 (13.71%)
 Unmapped: 348,323 (0.34%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 87,368,439 (85.95%)
Unique Reads: 85,716,367 (84.32%)
PCR Duplicates: 430,167 (0.42%)
Optical Duplicates: 1,221,905 (1.20%)
Library Complexity Estimate: 8,597,242,203
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 10,269,078 (10.10% / 11.98%)
Hi-C Contacts: 75,447,289 (74.22% / 88.02%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 57% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 34%
 Cis/all (FF and RR orient): 69.8%
Inter-chromosomal: 15,046,535  (14.80% / 17.55%)
Intra-chromosomal: 60,400,754  (59.42% / 70.47%)
Short Range (<1bp): 53  (0.00% / 0.00%)
Long Range (>1bp): 60,400,701  (59.42% / 70.47%)