Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/degron/dMR231-C -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.chr.sizes -q 30 -s none -n dMR231-C -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/degron/dMR231-C -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  108,355,200
 Normal Paired: 41,414,056 (38.22%)
 Chimeric Paired: 50,772,327 (46.86%)
 Chimeric Ambiguous: 15,775,600 (14.56%)
 Unmapped: 393,217 (0.36%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 92,186,383 (85.08%)
Unique Reads: 90,440,687 (83.47%)
PCR Duplicates: 433,711 (0.40%)
Optical Duplicates: 1,311,985 (1.21%)
Library Complexity Estimate: 9,490,028,813
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 11,136,403 (10.28% / 12.31%)
Hi-C Contacts: 79,304,284 (73.19% / 87.69%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 15% - 54% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 33%
 Cis/all (FF and RR orient): 75.0%
Inter-chromosomal: 13,309,450  (12.28% / 14.72%)
Intra-chromosomal: 65,994,834  (60.91% / 72.97%)
Short Range (<1bp): 62  (0.00% / 0.00%)
Long Range (>1bp): 65,994,772  (60.91% / 72.97%)