Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/degron/dMR231-C -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.chr.sizes -q 30 -s none -n dMR231-C -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/degron/dMR231-C -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 108,355,200 Normal Paired: 41,414,056 (38.22%) Chimeric Paired: 50,772,327 (46.86%) Chimeric Ambiguous: 15,775,600 (14.56%) Unmapped: 393,217 (0.36%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 92,186,383 (85.08%) Unique Reads: 90,440,687 (83.47%) PCR Duplicates: 433,711 (0.40%) Optical Duplicates: 1,311,985 (1.21%) Library Complexity Estimate: 9,490,028,813 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 11,136,403 (10.28% / 12.31%) Hi-C Contacts: 79,304,284 (73.19% / 87.69%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 15% - 54% - 15% - 15% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 33% Cis/all (FF and RR orient): 75.0% Inter-chromosomal: 13,309,450 (12.28% / 14.72%) Intra-chromosomal: 65,994,834 (60.91% / 72.97%) Short Range (<1bp): 62 (0.00% / 0.00%) Long Range (>1bp): 65,994,772 (60.91% / 72.97%)