Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/degron/dMR231-C -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.chr.sizes -q 30 -s none -n dMR231-C -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/degron/dMR231-C -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                
Unique Reads: 90,440,687 
PCR Duplicates: 433,711 
Optical Duplicates: 1,311,985 
Library Complexity Estimate: 9,490,028,813
Intra-fragment Reads: 0(0.00%)
Below MAPQ Threshold: 16,506,765(18.25%)
Hi-C Contacts: 73,933,922(81.75%)
 Ligation Motif Present: 0 (0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 15% - 55% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 34%
 Cis/all (FF and RR orient): 76.0%
Inter-chromosomal: 11,777,149 (13.02%)
Intra-chromosomal: 62,156,773 (68.73%)
Short Range (<1bp): 57 (0.00%)
Long Range (>1bp): 62,156,716 (68.73%)