Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/degron/dMR70-A -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.chr.sizes -q 30 -s none -n dMR70-A -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/pcH1/dMR70-A -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  135,752,021
 Normal Paired: 49,865,906 (36.73%)
 Chimeric Paired: 68,249,709 (50.28%)
 Chimeric Ambiguous: 17,099,939 (12.60%)
 Unmapped: 536,467 (0.40%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 118,115,615 (87.01%)
Unique Reads: 115,022,402 (84.73%)
PCR Duplicates: 864,143 (0.64%)
Optical Duplicates: 2,229,070 (1.64%)
Library Complexity Estimate: 7,731,848,959
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 19,774,312 (14.57% / 17.19%)
Hi-C Contacts: 95,248,090 (70.16% / 82.81%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 36%
 Cis/all (FF and RR orient): 67.9%
Inter-chromosomal: 19,638,895  (14.47% / 17.07%)
Intra-chromosomal: 75,609,195  (55.70% / 65.73%)
Short Range (<1bp): 68  (0.00% / 0.00%)
Long Range (>1bp): 75,609,127  (55.70% / 65.73%)