Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/degron/dMR70-A -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.chr.sizes -q 30 -s none -n dMR70-A -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/chr/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/pcH1/dMR70-A -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 135,752,021 Normal Paired: 49,865,906 (36.73%) Chimeric Paired: 68,249,709 (50.28%) Chimeric Ambiguous: 17,099,939 (12.60%) Unmapped: 536,467 (0.40%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 118,115,615 (87.01%) Unique Reads: 115,022,402 (84.73%) PCR Duplicates: 864,143 (0.64%) Optical Duplicates: 2,229,070 (1.64%) Library Complexity Estimate: 7,731,848,959 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 19,774,312 (14.57% / 17.19%) Hi-C Contacts: 95,248,090 (70.16% / 82.81%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 36% Cis/all (FF and RR orient): 67.9% Inter-chromosomal: 19,638,895 (14.47% / 17.07%) Intra-chromosomal: 75,609,195 (55.70% / 65.73%) Short Range (<1bp): 68 (0.00% / 0.00%) Long Range (>1bp): 75,609,127 (55.70% / 65.73%)