Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/AD020 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n CapH_aux -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/AD020 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  94,933
 Normal Paired: 80,532 (84.83%)
 Chimeric Paired: 4,198 (4.42%)
 Chimeric Ambiguous: 1,764 (1.86%)
 Unmapped: 8,439 (8.89%)
 Ligation Motif Present: 44,013 (46.36%)
Alignable (Normal+Chimeric Paired): 84,730 (89.25%)
Unique Reads: 84,709 (89.23%)
PCR Duplicates: 6 (0.01%)
Optical Duplicates: 15 (0.02%)
Library Complexity Estimate: 598,024,363
Intra-fragment Reads: 2,565 (2.70% / 3.03%)
Below MAPQ Threshold: 19,215 (20.24% / 22.68%)
Hi-C Contacts: 62,929 (66.29% / 74.29%)
 Ligation Motif Present: 26,583  (28.00% / 31.38%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,346  (9.84% / 11.03%)
Intra-chromosomal: 53,583  (56.44% / 63.26%)
Short Range (<20Kb): 23,095  (24.33% / 27.26%)
Long Range (>20Kb): 30,486  (32.11% / 35.99%)