Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/AD020 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n CapH_aux -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/AD020 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  94,933
 Normal Paired: 80,532 (84.83%)
 Chimeric Paired: 4,198 (4.42%)
 Chimeric Ambiguous: 1,764 (1.86%)
 Unmapped: 8,439 (8.89%)
 Ligation Motif Present: 44,013 (46.36%)
Alignable (Normal+Chimeric Paired): 84,730 (89.25%)
Unique Reads: 84,709 (89.23%)
PCR Duplicates: 6 (0.01%)
Optical Duplicates: 15 (0.02%)
Library Complexity Estimate: 598,024,363
Intra-fragment Reads: 2,565 (2.70% / 3.03%)
Below MAPQ Threshold: 24,721 (26.04% / 29.18%)
Hi-C Contacts: 57,423 (60.49% / 67.79%)
 Ligation Motif Present: 24,381  (25.68% / 28.78%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,993  (8.42% / 9.44%)
Intra-chromosomal: 49,430  (52.07% / 58.35%)
Short Range (<20Kb): 21,575  (22.73% / 25.47%)
Long Range (>20Kb): 27,853  (29.34% / 32.88%)