Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/AD002 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n CapH2_cntr -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/AD002 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 101,507 Normal Paired: 84,625 (83.37%) Chimeric Paired: 4,589 (4.52%) Chimeric Ambiguous: 1,802 (1.78%) Unmapped: 10,491 (10.34%) Ligation Motif Present: 45,632 (44.95%) Alignable (Normal+Chimeric Paired): 89,214 (87.89%) Unique Reads: 89,195 (87.87%) PCR Duplicates: 4 (0.00%) Optical Duplicates: 15 (0.01%) Library Complexity Estimate: 994,527,970 Intra-fragment Reads: 1,818 (1.79% / 2.04%) Below MAPQ Threshold: 20,498 (20.19% / 22.98%) Hi-C Contacts: 66,879 (65.89% / 74.98%) Ligation Motif Present: 27,520 (27.11% / 30.85%) 3' Bias (Long Range): 82% - 18% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 12,763 (12.57% / 14.31%) Intra-chromosomal: 54,116 (53.31% / 60.67%) Short Range (<20Kb): 19,746 (19.45% / 22.14%) Long Range (>20Kb): 34,370 (33.86% / 38.53%)