Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapH_aux2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/MG/CapH_aux2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/MG/CapH_aux2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  113,576
 Normal Paired: 42,076 (37.05%)
 Chimeric Paired: 47,001 (41.38%)
 Chimeric Ambiguous: 23,960 (21.10%)
 Unmapped: 539 (0.47%)
 Ligation Motif Present: 98,081 (86.36%)
Alignable (Normal+Chimeric Paired): 89,077 (78.43%)
Unique Reads: 88,537 (77.95%)
PCR Duplicates: 488 (0.43%)
Optical Duplicates: 52 (0.05%)
Library Complexity Estimate: 8,090,636
Intra-fragment Reads: 2,815 (2.48% / 3.18%)
Below MAPQ Threshold: 11,435 (10.07% / 12.92%)
Hi-C Contacts: 74,287 (65.41% / 83.91%)
 Ligation Motif Present: 47,243  (41.60% / 53.36%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,062  (12.38% / 15.88%)
Intra-chromosomal: 60,225  (53.03% / 68.02%)
Short Range (<20Kb): 27,815  (24.49% / 31.42%)
Long Range (>20Kb): 32,410  (28.54% / 36.61%)