Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/AD002 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n CapH2_cntr -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/AD002 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  101,507
 Normal Paired: 84,625 (83.37%)
 Chimeric Paired: 4,589 (4.52%)
 Chimeric Ambiguous: 1,802 (1.78%)
 Unmapped: 10,491 (10.34%)
 Ligation Motif Present: 45,632 (44.95%)
Alignable (Normal+Chimeric Paired): 89,214 (87.89%)
Unique Reads: 89,195 (87.87%)
PCR Duplicates: 4 (0.00%)
Optical Duplicates: 15 (0.01%)
Library Complexity Estimate: 994,527,970
Intra-fragment Reads: 1,818 (1.79% / 2.04%)
Below MAPQ Threshold: 26,387 (26.00% / 29.58%)
Hi-C Contacts: 60,990 (60.08% / 68.38%)
 Ligation Motif Present: 25,253  (24.88% / 28.31%)
 3' Bias (Long Range): 83% - 17%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,076  (10.91% / 12.42%)
Intra-chromosomal: 49,914  (49.17% / 55.96%)
Short Range (<20Kb): 18,472  (18.20% / 20.71%)
Long Range (>20Kb): 31,442  (30.98% / 35.25%)