Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapH_contr1 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/MG/CapH_contr1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/MG/CapH_contr1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  115,319
 Normal Paired: 43,675 (37.87%)
 Chimeric Paired: 47,509 (41.20%)
 Chimeric Ambiguous: 23,591 (20.46%)
 Unmapped: 544 (0.47%)
 Ligation Motif Present: 102,007 (88.46%)
Alignable (Normal+Chimeric Paired): 91,184 (79.07%)
Unique Reads: 90,539 (78.51%)
PCR Duplicates: 593 (0.51%)
Optical Duplicates: 52 (0.05%)
Library Complexity Estimate: 6,972,154
Intra-fragment Reads: 2,533 (2.20% / 2.80%)
Below MAPQ Threshold: 11,086 (9.61% / 12.24%)
Hi-C Contacts: 76,920 (66.70% / 84.96%)
 Ligation Motif Present: 49,817  (43.20% / 55.02%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,321  (10.68% / 13.61%)
Intra-chromosomal: 64,599  (56.02% / 71.35%)
Short Range (<20Kb): 29,719  (25.77% / 32.82%)
Long Range (>20Kb): 34,880  (30.25% / 38.52%)