Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapH_contr1 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/MG/CapH_contr1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/MG/CapH_contr1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 115,319 Normal Paired: 43,675 (37.87%) Chimeric Paired: 47,509 (41.20%) Chimeric Ambiguous: 23,591 (20.46%) Unmapped: 544 (0.47%) Ligation Motif Present: 102,007 (88.46%) Alignable (Normal+Chimeric Paired): 91,184 (79.07%) Unique Reads: 90,539 (78.51%) PCR Duplicates: 593 (0.51%) Optical Duplicates: 52 (0.05%) Library Complexity Estimate: 6,972,154 Intra-fragment Reads: 2,533 (2.20% / 2.80%) Below MAPQ Threshold: 16,132 (13.99% / 17.82%) Hi-C Contacts: 71,874 (62.33% / 79.38%) Ligation Motif Present: 47,030 (40.78% / 51.94%) 3' Bias (Long Range): 82% - 18% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 10,897 (9.45% / 12.04%) Intra-chromosomal: 60,977 (52.88% / 67.35%) Short Range (<20Kb): 28,488 (24.70% / 31.46%) Long Range (>20Kb): 32,489 (28.17% / 35.88%)