Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapH_contr1 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/MG/CapH_contr1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/MG/CapH_contr1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  115,319
 Normal Paired: 43,675 (37.87%)
 Chimeric Paired: 47,509 (41.20%)
 Chimeric Ambiguous: 23,591 (20.46%)
 Unmapped: 544 (0.47%)
 Ligation Motif Present: 102,007 (88.46%)
Alignable (Normal+Chimeric Paired): 91,184 (79.07%)
Unique Reads: 90,539 (78.51%)
PCR Duplicates: 593 (0.51%)
Optical Duplicates: 52 (0.05%)
Library Complexity Estimate: 6,972,154
Intra-fragment Reads: 2,533 (2.20% / 2.80%)
Below MAPQ Threshold: 16,132 (13.99% / 17.82%)
Hi-C Contacts: 71,874 (62.33% / 79.38%)
 Ligation Motif Present: 47,030  (40.78% / 51.94%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,897  (9.45% / 12.04%)
Intra-chromosomal: 60,977  (52.88% / 67.35%)
Short Range (<20Kb): 28,488  (24.70% / 31.46%)
Long Range (>20Kb): 32,489  (28.17% / 35.88%)