Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapH_contr2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/MG/CapH_contr2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/MG/CapH_contr2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  114,917
 Normal Paired: 42,395 (36.89%)
 Chimeric Paired: 47,577 (41.40%)
 Chimeric Ambiguous: 24,390 (21.22%)
 Unmapped: 555 (0.48%)
 Ligation Motif Present: 99,566 (86.64%)
Alignable (Normal+Chimeric Paired): 89,972 (78.29%)
Unique Reads: 89,325 (77.73%)
PCR Duplicates: 584 (0.51%)
Optical Duplicates: 63 (0.05%)
Library Complexity Estimate: 6,890,912
Intra-fragment Reads: 3,266 (2.84% / 3.66%)
Below MAPQ Threshold: 16,299 (14.18% / 18.25%)
Hi-C Contacts: 69,760 (60.70% / 78.10%)
 Ligation Motif Present: 44,862  (39.04% / 50.22%)
 3' Bias (Long Range): 83% - 17%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,869  (10.33% / 13.29%)
Intra-chromosomal: 57,891  (50.38% / 64.81%)
Short Range (<20Kb): 27,129  (23.61% / 30.37%)
Long Range (>20Kb): 30,762  (26.77% / 34.44%)