Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/RAA1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/RAA1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  49,562,263
 Normal Paired: 26,280,084 (53.02%)
 Chimeric Paired: 16,130,107 (32.55%)
 Chimeric Ambiguous: 6,347,514 (12.81%)
 Unmapped: 804,558 (1.62%)
 Ligation Motif Present: 37,246,433 (75.15%)
Alignable (Normal+Chimeric Paired): 42,410,191 (85.57%)
Unique Reads: 34,991,724 (70.60%)
PCR Duplicates: 6,897,029 (13.92%)
Optical Duplicates: 521,438 (1.05%)
Library Complexity Estimate: 112,820,657
Intra-fragment Reads: 1,990,404 (4.02% / 5.69%)
Below MAPQ Threshold: 4,851,056 (9.79% / 13.86%)
Hi-C Contacts: 28,150,264 (56.80% / 80.45%)
 Ligation Motif Present: 16,643,418  (33.58% / 47.56%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,404,003  (12.92% / 18.30%)
Intra-chromosomal: 21,746,261  (43.88% / 62.15%)
Short Range (<20Kb): 13,074,518  (26.38% / 37.36%)
Long Range (>20Kb): 8,671,690  (17.50% / 24.78%)