Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/RAA1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/RAA1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  49,562,263
 Normal Paired: 26,280,084 (53.02%)
 Chimeric Paired: 16,130,107 (32.55%)
 Chimeric Ambiguous: 6,347,514 (12.81%)
 Unmapped: 804,558 (1.62%)
 Ligation Motif Present: 37,246,433 (75.15%)
Alignable (Normal+Chimeric Paired): 42,410,191 (85.57%)
Unique Reads: 34,991,724 (70.60%)
PCR Duplicates: 6,897,029 (13.92%)
Optical Duplicates: 521,438 (1.05%)
Library Complexity Estimate: 112,820,657
Intra-fragment Reads: 1,990,404 (4.02% / 5.69%)
Below MAPQ Threshold: 6,699,754 (13.52% / 19.15%)
Hi-C Contacts: 26,301,566 (53.07% / 75.17%)
 Ligation Motif Present: 15,687,196  (31.65% / 44.83%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,736,160  (11.57% / 16.39%)
Intra-chromosomal: 20,565,406  (41.49% / 58.77%)
Short Range (<20Kb): 12,543,201  (25.31% / 35.85%)
Long Range (>20Kb): 8,022,157  (16.19% / 22.93%)