Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/RAA2 -n RAA2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/RAA2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  46,478,883
 Normal Paired: 25,459,103 (54.78%)
 Chimeric Paired: 14,505,745 (31.21%)
 Chimeric Ambiguous: 5,804,475 (12.49%)
 Unmapped: 709,560 (1.53%)
 Ligation Motif Present: 33,768,692 (72.65%)
Alignable (Normal+Chimeric Paired): 39,964,848 (85.98%)
Unique Reads: 33,373,210 (71.80%)
PCR Duplicates: 6,157,926 (13.25%)
Optical Duplicates: 433,712 (0.93%)
Library Complexity Estimate: 113,335,210
Intra-fragment Reads: 2,304,892 (4.96% / 6.91%)
Below MAPQ Threshold: 4,525,120 (9.74% / 13.56%)
Hi-C Contacts: 26,543,198 (57.11% / 79.53%)
 Ligation Motif Present: 15,433,395  (33.21% / 46.24%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,488,975  (11.81% / 16.45%)
Intra-chromosomal: 21,054,223  (45.30% / 63.09%)
Short Range (<20Kb): 12,997,008  (27.96% / 38.94%)
Long Range (>20Kb): 8,057,167  (17.34% / 24.14%)