Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/RAA2 -n RAA2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/RAA2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  46,478,883
 Normal Paired: 25,459,103 (54.78%)
 Chimeric Paired: 14,505,745 (31.21%)
 Chimeric Ambiguous: 5,804,475 (12.49%)
 Unmapped: 709,560 (1.53%)
 Ligation Motif Present: 33,768,692 (72.65%)
Alignable (Normal+Chimeric Paired): 39,964,848 (85.98%)
Unique Reads: 33,373,210 (71.80%)
PCR Duplicates: 6,157,926 (13.25%)
Optical Duplicates: 433,712 (0.93%)
Library Complexity Estimate: 113,335,210
Intra-fragment Reads: 2,304,892 (4.96% / 6.91%)
Below MAPQ Threshold: 6,249,429 (13.45% / 18.73%)
Hi-C Contacts: 24,818,889 (53.40% / 74.37%)
 Ligation Motif Present: 14,550,107  (31.30% / 43.60%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,899,035  (10.54% / 14.68%)
Intra-chromosomal: 19,919,854  (42.86% / 59.69%)
Short Range (<20Kb): 12,469,623  (26.83% / 37.36%)
Long Range (>20Kb): 7,450,190  (16.03% / 22.32%)