Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/RAAcomb -n RAAcomb -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/RAAcomb -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  96,041,146
 Normal Paired: 51,739,187 (53.87%)
 Chimeric Paired: 30,635,852 (31.90%)
 Chimeric Ambiguous: 12,151,989 (12.65%)
 Unmapped: 1,514,118 (1.58%)
 Ligation Motif Present: 71,015,125 (73.94%)
Alignable (Normal+Chimeric Paired): 82,375,039 (85.77%)
Unique Reads: 67,673,493 (70.46%)
PCR Duplicates: 13,755,069 (14.32%)
Optical Duplicates: 946,477 (0.99%)
Library Complexity Estimate: 213,039,524
Intra-fragment Reads: 4,243,496 (4.42% / 6.27%)
Below MAPQ Threshold: 12,859,198 (13.39% / 19.00%)
Hi-C Contacts: 50,570,799 (52.66% / 74.73%)
 Ligation Motif Present: 29,977,648  (31.21% / 44.30%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,634,000  (11.07% / 15.71%)
Intra-chromosomal: 39,936,799  (41.58% / 59.01%)
Short Range (<20Kb): 24,466,009  (25.47% / 36.15%)
Long Range (>20Kb): 15,470,701  (16.11% / 22.86%)