Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NYRADC -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NYRADC -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  79,620,866
 Normal Paired: 38,008,007 (47.74%)
 Chimeric Paired: 29,025,994 (36.46%)
 Chimeric Ambiguous: 12,201,387 (15.32%)
 Unmapped: 385,478 (0.48%)
 Ligation Motif Present: 63,190,234 (79.36%)
Alignable (Normal+Chimeric Paired): 67,034,001 (84.19%)
Unique Reads: 59,308,158 (74.49%)
PCR Duplicates: 7,163,628 (9.00%)
Optical Duplicates: 562,215 (0.71%)
Library Complexity Estimate: 285,818,184
Intra-fragment Reads: 3,177,037 (3.99% / 5.36%)
Below MAPQ Threshold: 8,018,672 (10.07% / 13.52%)
Hi-C Contacts: 48,112,449 (60.43% / 81.12%)
 Ligation Motif Present: 29,075,670  (36.52% / 49.02%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,555,906  (9.49% / 12.74%)
Intra-chromosomal: 40,556,543  (50.94% / 68.38%)
Short Range (<20Kb): 20,377,355  (25.59% / 34.36%)
Long Range (>20Kb): 20,179,134  (25.34% / 34.02%)