Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/RC2 -n RC2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/RC2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  47,342,883
 Normal Paired: 21,680,422 (45.79%)
 Chimeric Paired: 17,408,025 (36.77%)
 Chimeric Ambiguous: 7,591,483 (16.04%)
 Unmapped: 662,953 (1.40%)
 Ligation Motif Present: 37,448,507 (79.10%)
Alignable (Normal+Chimeric Paired): 39,088,447 (82.56%)
Unique Reads: 33,267,542 (70.27%)
PCR Duplicates: 5,403,660 (11.41%)
Optical Duplicates: 417,245 (0.88%)
Library Complexity Estimate: 125,159,601
Intra-fragment Reads: 1,400,895 (2.96% / 4.21%)
Below MAPQ Threshold: 4,776,704 (10.09% / 14.36%)
Hi-C Contacts: 27,089,943 (57.22% / 81.43%)
 Ligation Motif Present: 16,037,506  (33.88% / 48.21%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,212,703  (8.90% / 12.66%)
Intra-chromosomal: 22,877,240  (48.32% / 68.77%)
Short Range (<20Kb): 11,212,542  (23.68% / 33.70%)
Long Range (>20Kb): 11,664,661  (24.64% / 35.06%)