Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/RC2 -n RC2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/RC2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  47,342,883
 Normal Paired: 21,680,422 (45.79%)
 Chimeric Paired: 17,408,025 (36.77%)
 Chimeric Ambiguous: 7,591,483 (16.04%)
 Unmapped: 662,953 (1.40%)
 Ligation Motif Present: 37,448,507 (79.10%)
Alignable (Normal+Chimeric Paired): 39,088,447 (82.56%)
Unique Reads: 33,267,542 (70.27%)
PCR Duplicates: 5,403,660 (11.41%)
Optical Duplicates: 417,245 (0.88%)
Library Complexity Estimate: 125,159,601
Intra-fragment Reads: 1,400,895 (2.96% / 4.21%)
Below MAPQ Threshold: 6,632,775 (14.01% / 19.94%)
Hi-C Contacts: 25,233,872 (53.30% / 75.85%)
 Ligation Motif Present: 15,073,158  (31.84% / 45.31%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,688,399  (7.79% / 11.09%)
Intra-chromosomal: 21,545,473  (45.51% / 64.76%)
Short Range (<20Kb): 10,717,124  (22.64% / 32.21%)
Long Range (>20Kb): 10,828,316  (22.87% / 32.55%)