Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -S dedup -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/RCcomb -n RCcomb -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/RCcomb -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                    
Unique Reads: 92,093,272 
PCR Duplicates: 13,054,629 
Optical Duplicates: 974,547 
Library Complexity Estimate: 387,627,475
Intra-fragment Reads: 4,535,658(4.93%)
Below MAPQ Threshold: 17,694,032(19.21%)
Hi-C Contacts: 69,863,582(75.86%)
 Ligation Motif Present: 42,278,041 (45.91%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,347,771 (11.24%)
Intra-chromosomal: 59,515,811 (64.63%)
Short Range (<20Kb): 29,912,242 (32.48%)
Long Range (>20Kb): 29,603,487 (32.15%)