Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SAA1 -n SAA1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SAA1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  47,955,147
 Normal Paired: 20,562,962 (42.88%)
 Chimeric Paired: 18,423,993 (38.42%)
 Chimeric Ambiguous: 8,258,617 (17.22%)
 Unmapped: 709,575 (1.48%)
 Ligation Motif Present: 39,374,783 (82.11%)
Alignable (Normal+Chimeric Paired): 38,986,955 (81.30%)
Unique Reads: 33,032,431 (68.88%)
PCR Duplicates: 5,504,983 (11.48%)
Optical Duplicates: 449,541 (0.94%)
Library Complexity Estimate: 121,712,395
Intra-fragment Reads: 1,148,404 (2.39% / 3.48%)
Below MAPQ Threshold: 4,676,289 (9.75% / 14.16%)
Hi-C Contacts: 27,207,738 (56.74% / 82.37%)
 Ligation Motif Present: 16,499,193  (34.41% / 49.95%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,063,585  (6.39% / 9.27%)
Intra-chromosomal: 24,144,153  (50.35% / 73.09%)
Short Range (<20Kb): 11,950,860  (24.92% / 36.18%)
Long Range (>20Kb): 12,193,257  (25.43% / 36.91%)