Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SAA1 -n SAA1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SAA1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  47,955,147
 Normal Paired: 20,562,962 (42.88%)
 Chimeric Paired: 18,423,993 (38.42%)
 Chimeric Ambiguous: 8,258,617 (17.22%)
 Unmapped: 709,575 (1.48%)
 Ligation Motif Present: 39,374,783 (82.11%)
Alignable (Normal+Chimeric Paired): 38,986,955 (81.30%)
Unique Reads: 33,032,431 (68.88%)
PCR Duplicates: 5,504,983 (11.48%)
Optical Duplicates: 449,541 (0.94%)
Library Complexity Estimate: 121,712,395
Intra-fragment Reads: 1,148,404 (2.39% / 3.48%)
Below MAPQ Threshold: 6,519,491 (13.59% / 19.74%)
Hi-C Contacts: 25,364,536 (52.89% / 76.79%)
 Ligation Motif Present: 15,526,381  (32.38% / 47.00%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,637,211  (5.50% / 7.98%)
Intra-chromosomal: 22,727,325  (47.39% / 68.80%)
Short Range (<20Kb): 11,406,254  (23.79% / 34.53%)
Long Range (>20Kb): 11,321,037  (23.61% / 34.27%)