Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SAA2 -n SAA2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SAA2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  47,383,460
 Normal Paired: 20,361,072 (42.97%)
 Chimeric Paired: 18,053,774 (38.10%)
 Chimeric Ambiguous: 8,328,033 (17.58%)
 Unmapped: 640,581 (1.35%)
 Ligation Motif Present: 39,355,623 (83.06%)
Alignable (Normal+Chimeric Paired): 38,414,846 (81.07%)
Unique Reads: 32,389,865 (68.36%)
PCR Duplicates: 5,604,799 (11.83%)
Optical Duplicates: 420,182 (0.89%)
Library Complexity Estimate: 115,778,534
Intra-fragment Reads: 1,328,403 (2.80% / 4.10%)
Below MAPQ Threshold: 4,292,775 (9.06% / 13.25%)
Hi-C Contacts: 26,768,687 (56.49% / 82.65%)
 Ligation Motif Present: 16,470,387  (34.76% / 50.85%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,951,355  (6.23% / 9.11%)
Intra-chromosomal: 23,817,332  (50.27% / 73.53%)
Short Range (<20Kb): 12,278,265  (25.91% / 37.91%)
Long Range (>20Kb): 11,539,036  (24.35% / 35.63%)