Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SAAcomb -n SAAcomb -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SAAcomb -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  95,338,607
 Normal Paired: 40,924,034 (42.92%)
 Chimeric Paired: 36,477,767 (38.26%)
 Chimeric Ambiguous: 16,586,650 (17.40%)
 Unmapped: 1,350,156 (1.42%)
 Ligation Motif Present: 78,730,406 (82.58%)
Alignable (Normal+Chimeric Paired): 77,401,801 (81.19%)
Unique Reads: 65,213,290 (68.40%)
PCR Duplicates: 11,321,254 (11.87%)
Optical Duplicates: 867,257 (0.91%)
Library Complexity Estimate: 232,500,858
Intra-fragment Reads: 2,456,086 (2.58% / 3.77%)
Below MAPQ Threshold: 8,936,648 (9.37% / 13.70%)
Hi-C Contacts: 53,820,556 (56.45% / 82.53%)
 Ligation Motif Present: 32,859,135  (34.47% / 50.39%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,012,648  (6.31% / 9.22%)
Intra-chromosomal: 47,807,908  (50.15% / 73.31%)
Short Range (<20Kb): 24,076,059  (25.25% / 36.92%)
Long Range (>20Kb): 23,731,782  (24.89% / 36.39%)