Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SC1 -n SC1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SC1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  54,616,419
 Normal Paired: 21,404,070 (39.19%)
 Chimeric Paired: 22,304,700 (40.84%)
 Chimeric Ambiguous: 10,201,036 (18.68%)
 Unmapped: 706,613 (1.29%)
 Ligation Motif Present: 46,569,308 (85.27%)
Alignable (Normal+Chimeric Paired): 43,708,770 (80.03%)
Unique Reads: 36,805,637 (67.39%)
PCR Duplicates: 6,381,423 (11.68%)
Optical Duplicates: 521,710 (0.96%)
Library Complexity Estimate: 131,355,612
Intra-fragment Reads: 830,227 (1.52% / 2.26%)
Below MAPQ Threshold: 5,178,986 (9.48% / 14.07%)
Hi-C Contacts: 30,796,424 (56.39% / 83.67%)
 Ligation Motif Present: 19,036,527  (34.85% / 51.72%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,199,358  (5.86% / 8.69%)
Intra-chromosomal: 27,597,066  (50.53% / 74.98%)
Short Range (<20Kb): 12,024,445  (22.02% / 32.67%)
Long Range (>20Kb): 15,572,598  (28.51% / 42.31%)