Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SC1 -n SC1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SC1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  54,616,419
 Normal Paired: 21,404,070 (39.19%)
 Chimeric Paired: 22,304,700 (40.84%)
 Chimeric Ambiguous: 10,201,036 (18.68%)
 Unmapped: 706,613 (1.29%)
 Ligation Motif Present: 46,569,308 (85.27%)
Alignable (Normal+Chimeric Paired): 43,708,770 (80.03%)
Unique Reads: 36,805,637 (67.39%)
PCR Duplicates: 6,381,423 (11.68%)
Optical Duplicates: 521,710 (0.96%)
Library Complexity Estimate: 131,355,612
Intra-fragment Reads: 830,227 (1.52% / 2.26%)
Below MAPQ Threshold: 7,277,950 (13.33% / 19.77%)
Hi-C Contacts: 28,697,460 (52.54% / 77.97%)
 Ligation Motif Present: 17,916,503  (32.80% / 48.68%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,748,574  (5.03% / 7.47%)
Intra-chromosomal: 25,948,886  (47.51% / 70.50%)
Short Range (<20Kb): 11,477,010  (21.01% / 31.18%)
Long Range (>20Kb): 14,471,855  (26.50% / 39.32%)