Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SC2 -n SC2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SC2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  51,080,978
 Normal Paired: 20,567,905 (40.27%)
 Chimeric Paired: 20,530,460 (40.19%)
 Chimeric Ambiguous: 9,113,971 (17.84%)
 Unmapped: 868,642 (1.70%)
 Ligation Motif Present: 42,692,933 (83.58%)
Alignable (Normal+Chimeric Paired): 41,098,365 (80.46%)
Unique Reads: 34,917,497 (68.36%)
PCR Duplicates: 5,694,752 (11.15%)
Optical Duplicates: 486,116 (0.95%)
Library Complexity Estimate: 130,933,652
Intra-fragment Reads: 817,552 (1.60% / 2.34%)
Below MAPQ Threshold: 6,819,813 (13.35% / 19.53%)
Hi-C Contacts: 27,280,132 (53.41% / 78.13%)
 Ligation Motif Present: 16,741,745  (32.77% / 47.95%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,563,091  (5.02% / 7.34%)
Intra-chromosomal: 24,717,041  (48.39% / 70.79%)
Short Range (<20Kb): 10,782,185  (21.11% / 30.88%)
Long Range (>20Kb): 13,934,826  (27.28% / 39.91%)