Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SCcomb -n SCcomb -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SCcomb -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  105,697,397
 Normal Paired: 41,971,975 (39.71%)
 Chimeric Paired: 42,835,160 (40.53%)
 Chimeric Ambiguous: 19,315,007 (18.27%)
 Unmapped: 1,575,255 (1.49%)
 Ligation Motif Present: 89,262,241 (84.45%)
Alignable (Normal+Chimeric Paired): 84,807,135 (80.24%)
Unique Reads: 71,565,568 (67.71%)
PCR Duplicates: 12,235,295 (11.58%)
Optical Duplicates: 1,006,272 (0.95%)
Library Complexity Estimate: 258,308,532
Intra-fragment Reads: 1,637,465 (1.55% / 2.29%)
Below MAPQ Threshold: 9,990,070 (9.45% / 13.96%)
Hi-C Contacts: 59,938,033 (56.71% / 83.75%)
 Ligation Motif Present: 36,713,915  (34.73% / 51.30%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,185,906  (5.85% / 8.64%)
Intra-chromosomal: 53,752,127  (50.85% / 75.11%)
Short Range (<20Kb): 23,201,351  (21.95% / 32.42%)
Long Range (>20Kb): 30,550,719  (28.90% / 42.69%)