Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/SC22 -n SC22 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/SC22 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  277,222
 Normal Paired: 124,469 (44.90%)
 Chimeric Paired: 82,082 (29.61%)
 Chimeric Ambiguous: 55,541 (20.03%)
 Unmapped: 15,130 (5.46%)
 Ligation Motif Present: 229,815 (82.90%)
Alignable (Normal+Chimeric Paired): 206,551 (74.51%)
Unique Reads: 184,989 (66.73%)
PCR Duplicates: 19,971 (7.20%)
Optical Duplicates: 1,591 (0.57%)
Library Complexity Estimate: 982,248
Intra-fragment Reads: 5,940 (2.14% / 3.21%)
Below MAPQ Threshold: 25,491 (9.20% / 13.78%)
Hi-C Contacts: 153,558 (55.39% / 83.01%)
 Ligation Motif Present: 102,294  (36.90% / 55.30%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 15,795  (5.70% / 8.54%)
Intra-chromosomal: 137,763  (49.69% / 74.47%)
Short Range (<20Kb): 83,781  (30.22% / 45.29%)
Long Range (>20Kb): 53,981  (19.47% / 29.18%)