Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/FFPE/Ng019 -s none -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  63,199
 Normal Paired: 44,785 (70.86%)
 Chimeric Paired: 14,384 (22.76%)
 Chimeric Ambiguous: 3,731 (5.90%)
 Unmapped: 299 (0.47%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 59,169 (93.62%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T14:43:18,312]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 58,871 (93.15%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 298 (0.47%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 8,369 (13.24% / 14.22%)
Hi-C Contacts: 50,502 (79.91% / 85.78%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 2% - 93% - 2% - 2%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 26% - 24%
 DE: 71%
 Cis/all (FF and RR orient): 23.6%
Inter-chromosomal: 11,140  (17.63% / 18.92%)
Intra-chromosomal: 39,362  (62.28% / 66.86%)
Short Range (<20,000bp): 37,224  (58.90% / 63.23%)
Long Range (>20,000bp): 2,138  (3.38% / 3.63%)