Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/FFPE/Ng025 -s none -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  82,524
 Normal Paired: 54,171 (65.64%)
 Chimeric Paired: 24,582 (29.79%)
 Chimeric Ambiguous: 3,647 (4.42%)
 Unmapped: 124 (0.15%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 78,753 (95.43%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T14:43:54,952]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 78,198 (94.76%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 555 (0.67%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,015 (7.29% / 7.69%)
Hi-C Contacts: 72,183 (87.47% / 92.31%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 26% - 24% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 67.1%
Inter-chromosomal: 8,624  (10.45% / 11.03%)
Intra-chromosomal: 63,559  (77.02% / 81.28%)
Short Range (<20,000bp): 50,867  (61.64% / 65.05%)
Long Range (>20,000bp): 12,692  (15.38% / 16.23%)