Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/FFPE/Ng025 -s none -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  82,524
 Normal Paired: 54,171 (65.64%)
 Chimeric Paired: 24,582 (29.79%)
 Chimeric Ambiguous: 3,647 (4.42%)
 Unmapped: 124 (0.15%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 78,753 (95.43%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T14:43:54,952]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 78,198 (94.76%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 555 (0.67%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 8,870 (10.75% / 11.34%)
Hi-C Contacts: 69,328 (84.01% / 88.66%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 26% - 24% - 25% - 25%
 DE: 64%
 Cis/all (FF and RR orient): 67.8%
Inter-chromosomal: 7,973  (9.66% / 10.20%)
Intra-chromosomal: 61,355  (74.35% / 78.46%)
Short Range (<20,000bp): 49,338  (59.79% / 63.09%)
Long Range (>20,000bp): 12,017  (14.56% / 15.37%)