Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/FFPE/Z11-17 -s none -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  45,813,376
 Normal Paired: 23,813,760 (51.98%)
 Chimeric Paired: 17,501,795 (38.20%)
 Chimeric Ambiguous: 4,378,047 (9.56%)
 Unmapped: 119,774 (0.26%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 41,315,555 (90.18%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T16:04:28,196]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 39,835,373 (86.95%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,480,182 (3.23%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,350,420 (7.31% / 8.41%)
Hi-C Contacts: 36,484,953 (79.64% / 91.59%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 81.4%
Inter-chromosomal: 2,890,992  (6.31% / 7.26%)
Intra-chromosomal: 33,593,961  (73.33% / 84.33%)
Short Range (<20,000bp): 27,271,975  (59.53% / 68.46%)
Long Range (>20,000bp): 6,321,986  (13.80% / 15.87%)