Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 12 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2021-07-08_BGI_ExoC/s129_A549 -s none -p /mnt/storage/home/talagunov/genomes/references/hg19/hg19.chromsizes.for.coller -z /mnt/storage/home/talagunov/genomes/references/hg19/hg19.fa -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 12                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  41,325,957
 Normal Paired: 27,387,717 (66.27%)
 Chimeric Paired: 11,038,492 (26.71%)
 Chimeric Ambiguous: 2,064,349 (5.00%)
 Unmapped: 835,399 (2.02%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 38,426,209 (92.98%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-10-12T02:24:19,977]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 30,763,615 (74.44%)
PCR Duplicates: 7,259,767 (17.57%)
Optical Duplicates: 402,827 (0.97%)
Library Complexity Estimate: 86,449,709
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,402,853 (5.81% / 7.81%)
Hi-C Contacts: 28,360,762 (68.63% / 92.19%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 66%
 Cis/all (FF and RR orient): 81.9%
Inter-chromosomal: 1,724,881  (4.17% / 5.61%)
Intra-chromosomal: 26,635,881  (64.45% / 86.58%)
Short Range (<20,000bp): 21,514,574  (52.06% / 69.94%)
Long Range (>20,000bp): 5,121,307  (12.39% / 16.65%)