Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/Patient/P137 -s none -p /data/nyt/MMO/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /data/nyt/MMO/Databases/hg19_canonical/hg19_canonical.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  24,700,944
 Normal Paired: 10,742,360 (43.49%)
 Chimeric Paired: 11,295,862 (45.73%)
 Chimeric Ambiguous: 2,589,486 (10.48%)
 Unmapped: 73,236 (0.30%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 22,038,222 (89.22%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T17:22:22,594]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 21,701,722 (87.86%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 336,500 (1.36%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,068,612 (8.37% / 9.53%)
Hi-C Contacts: 19,633,110 (79.48% / 90.47%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 66% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 34%
 Cis/all (FF and RR orient): 41.5%
Inter-chromosomal: 7,625,747  (30.87% / 35.14%)
Intra-chromosomal: 12,007,363  (48.61% / 55.33%)
Short Range (<20,000bp): 7,813,459  (31.63% / 36.00%)
Long Range (>20,000bp): 4,193,904  (16.98% / 19.33%)