Experiment description: ${about}; Juicer version 1.5.6; BWA 0.7.17-r1188; 15 threads; java version "1.8.0_45"; /mnt/storage/home/talagunov/soft/juicer_mir/CPU/juicer.sh -n sar11 -g hgT2T -D /mnt/storage/home/talagunov/soft/juicer_mir/CPU/ -t 15 -z /mnt/storage/home/talagunov/genomes/references/hgT2T/hgT2T.fa -a sar11 hgT2T -p /mnt/storage/home/talagunov/genomes/references/hgT2T/hgT2T.chromsizes -d /mnt/scratch/ws/talagunov/202307011249talagunov11/sarkoma/sar11 -s none -x                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  1,959,041
 Normal Paired: 1,306,304 (66.68%)
 Chimeric Paired: 470,431 (24.01%)
 Chimeric Ambiguous: 99,118 (5.06%)
 Unmapped: 83,188 (4.25%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 1,776,735 (90.69%)
Unique Reads: 1,761,359 (89.91%)
PCR Duplicates: 14,719 (0.75%)
Optical Duplicates: 657 (0.03%)
Library Complexity Estimate: 106,562,973
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 244,851 (12.50% / 13.90%)
Hi-C Contacts: 1,516,508 (77.41% / 86.10%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 72%
 Cis/all (FF and RR orient): 86.8%
Inter-chromosomal: 55,836  (2.85% / 3.17%)
Intra-chromosomal: 1,460,672  (74.56% / 82.93%)
Short Range (<20,000bp): 1,259,532  (64.29% / 71.51%)
Long Range (>20,000bp): 201,140  (10.27% / 11.42%)