Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/69425 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  59,546,353
 Normal Paired: 41,701,462 (70.03%)
 Chimeric Paired: 11,674,027 (19.60%)
 Chimeric Ambiguous: 2,572,058 (4.32%)
 Unmapped: 3,598,806 (6.04%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 53,375,489 (89.64%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T15:55:09,040]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 45,603,244 (76.58%)
PCR Duplicates: 7,592,206 (12.75%)
Optical Duplicates: 180,039 (0.30%)
Library Complexity Estimate: 168,170,138
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 8,079,927 (13.57% / 17.72%)
Hi-C Contacts: 37,523,317 (63.02% / 82.28%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 24% - 26% - 24% - 26%
 DE: 82%
 Cis/all (FF and RR orient): 64.9%
Inter-chromosomal: 2,423,470  (4.07% / 5.31%)
Intra-chromosomal: 35,099,847  (58.95% / 76.97%)
Short Range (<20,000bp): 33,024,973  (55.46% / 72.42%)
Long Range (>20,000bp): 2,074,874  (3.48% / 4.55%)