Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/69425 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  38,956,114
 Normal Paired: 30,753,093 (78.94%)
 Chimeric Paired: 6,774,867 (17.39%)
 Chimeric Ambiguous: 936,542 (2.40%)
 Unmapped: 491,612 (1.26%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 37,527,960 (96.33%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T07:09:53,523]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 15,631,353 (40.13%)
PCR Duplicates: 21,805,079 (55.97%)
Optical Duplicates: 91,528 (0.23%)
Library Complexity Estimate: 17,806,726
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,165,327 (5.56% / 13.85%)
Hi-C Contacts: 13,466,026 (34.57% / 86.15%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 78%
 Cis/all (FF and RR orient): 66.8%
Inter-chromosomal: 976,099  (2.51% / 6.24%)
Intra-chromosomal: 12,489,927  (32.06% / 79.90%)
Short Range (<20,000bp): 11,584,851  (29.74% / 74.11%)
Long Range (>20,000bp): 905,076  (2.32% / 5.79%)