Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/ALK_10 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  64,680,682
 Normal Paired: 45,595,661 (70.49%)
 Chimeric Paired: 12,095,418 (18.70%)
 Chimeric Ambiguous: 2,902,042 (4.49%)
 Unmapped: 4,087,561 (6.32%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 57,691,079 (89.19%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T21:59:30,789]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 49,675,062 (76.80%)
PCR Duplicates: 7,822,390 (12.09%)
Optical Duplicates: 193,627 (0.30%)
Library Complexity Estimate: 191,678,632
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,780,147 (15.12% / 19.69%)
Hi-C Contacts: 39,894,915 (61.68% / 80.31%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 92% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 24% - 26% - 24% - 26%
 DE: 84%
 Cis/all (FF and RR orient): 62.7%
Inter-chromosomal: 2,366,887  (3.66% / 4.76%)
Intra-chromosomal: 37,528,028  (58.02% / 75.55%)
Short Range (<20,000bp): 34,706,725  (53.66% / 69.87%)
Long Range (>20,000bp): 2,821,303  (4.36% / 5.68%)