Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/ALK_10 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  55,802,455
 Normal Paired: 45,148,812 (80.91%)
 Chimeric Paired: 8,531,639 (15.29%)
 Chimeric Ambiguous: 1,422,309 (2.55%)
 Unmapped: 699,695 (1.25%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 53,680,451 (96.20%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T14:42:25,048]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 22,962,234 (41.15%)
PCR Duplicates: 30,585,061 (54.81%)
Optical Duplicates: 133,156 (0.24%)
Library Complexity Estimate: 26,458,848
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,419,915 (7.92% / 19.25%)
Hi-C Contacts: 18,542,319 (33.23% / 80.75%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 90% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 81%
 Cis/all (FF and RR orient): 65.5%
Inter-chromosomal: 1,195,373  (2.14% / 5.21%)
Intra-chromosomal: 17,346,946  (31.09% / 75.55%)
Short Range (<20,000bp): 15,785,702  (28.29% / 68.75%)
Long Range (>20,000bp): 1,561,244  (2.80% / 6.80%)