Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/ALK_16 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  47,298,106
 Normal Paired: 29,995,950 (63.42%)
 Chimeric Paired: 13,331,733 (28.19%)
 Chimeric Ambiguous: 2,727,931 (5.77%)
 Unmapped: 1,242,492 (2.63%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 43,327,683 (91.61%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T22:39:02,796]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 37,506,237 (79.30%)
PCR Duplicates: 5,656,311 (11.96%)
Optical Duplicates: 165,135 (0.35%)
Library Complexity Estimate: 149,957,953
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,720,570 (9.98% / 12.59%)
Hi-C Contacts: 32,785,667 (69.32% / 87.41%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 70%
 Cis/all (FF and RR orient): 75.5%
Inter-chromosomal: 2,400,463  (5.08% / 6.40%)
Intra-chromosomal: 30,385,204  (64.24% / 81.01%)
Short Range (<20,000bp): 26,487,098  (56.00% / 70.62%)
Long Range (>20,000bp): 3,898,106  (8.24% / 10.39%)